MarpoDB - Data
Here you can download collections of sequences stored in MarpoDB:
- Promoters [Tak3.1 | Cam]
- 5'UTRs [Tak3.1 | Cam]
- CDSs [Tak3.1 | Cam]
- Proteins [Tak3.1 | Cam]
- 3'UTRs [Tak3.1 | Cam]
- Terminators [Tak3.1 | Cam]
- Genes (Promoter + 5'UTR + CDS + 3'UTR + Terminator) [Tak3.1 | Cam]
Here are the raw annotation data, used in MarpoDB:
If you want to have a local version of the complete MarpoDB, you can download a PostgreSQL dump and recover it using pg_restore tool:
pg_restore -d marpodb --no-owner marpodb4.dump
Where '-d marpodb' should be substituted with the name of an empty local database.
If the rest is not enough, check out the Python bindings.
* The visualisation prepared with a help of pgModeler